Paper Title :Multithreaded KMP: A Proposed DNA Sequencing Algorithm

Author :Samarjeet Borah, Debashree Bhattacharjee, Krishna Vijay Kr. Singh, Bikash Rai

Article Citation :Samarjeet Borah ,Debashree Bhattacharjee ,Krishna Vijay Kr. Singh ,Bikash Rai , (2015 ) " Multithreaded KMP: A Proposed DNA Sequencing Algorithm " , International Journal of Advances in Science, Engineering and Technology(IJASEAT) , pp. 36-39, Volume-3, issue-4, Spl. Iss-3

Abstract : DNA sequencing is the process of decoding the nucleotide bases in a DNA molecule. The advent of DNA sequencing has significantly accelerated biological research and discovery. There are a number of string searching algorithms as well which are widely used for DNA sequencing namely Knuth-Morris- Pratt (KMP), Boyer Moore, Rabin- Karp, Longest Common Subsequence Problem etc. In this paper a multithreaded KMP algorithm is proposed for DNA sequencing. This work primarily aims at reducing the pattern searching time of the original KMP algorithm by using the concepts of divide and conquer and parallel processing techniques and also enables it to make a search on all the available matches of the source DNA thereby increasing its flexibility. Keywords- KMP Algorithm, DNA Sequencing, Alignment, String Matching, Time.

Type : Research paper

Published : Volume-3, issue-4, Spl. Iss-3

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